Click to see a
full list of conference papers
Click to see a full
list of journal papers
1.
Sheng
Wang, Zhen Li, Yizhou Yu and Jinbo Xu. Folding
membrane proteins by deep transfer learning. Featured in Cell Systems,
2017.
2.
Sheng
Wang, Siqi Sun, Zhen Li, Renyu
Zhang and Jinbo Xu. Accurate
De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. PLOS Computational Biology, 2017.
See here
for a ranking list of all the CASP12 contact predictors.
3.
Jianzhu Ma,
Sheng Wang and Jinbo Xu. MRFalign:
protein remote homology detection through alignment of Markov Random Fields.
RECOMB2014 (Best Paper Award) and PLOS Computational Biology.
4. Jianzhu Ma, Jian Peng, Sheng Wang and Jinbo Xu. Estimating the partition function of graphical models using Langevin importance sampling. AI and Statistics (AISTATS) 2013.
5. Morten Kallerg, Haipeng Wang, Jian Peng, Sheng Wang , Zhiyong Wang, Hui Lu and Jinbo Xu. Template-based protein modeling using the RaptorX web server. Nature Protocols, 2012 Jul 19; 7(8):1511-22.
6.
Feng
Zhao and Jinbo Xu. A position-specific statistical potential for
protein structure and functional study. (Cell) STRUCTURE, Volume 20, Issue 6,
1118-1126, 17 May 2012.
7. Rohit Singh, Jinbo Xu and Bonnie Berger. Global alignment of multiple protein interaction networks with application to functional orthology detection. PNAS, 2008.
8.
Jinbo
Xu. Rapid protein side-chain packing via
tree decomposition. RECOMB, 2005 (An extended
version was invited to the Journal of the ACM.)